Freezeout

FS-257

The heatwave has hit the northwest. Today’s temperatures on the Palouse rose into the high 90’s, and tomorrow it may break 100. I wanted to hike so I can get in shape for backpacking next month, so I thought I’d take the dogs up to Freezeout Saddle and hike to Grandmother Mountain. But when I got up there, it was also hot and somewhat muggy, so we didn’t make it very far. I brought the camera, but got no pictures on this trip. The summer wildflowers are starting to bloom: beargrass was in its early stages, and the lupine had buds, but no open flowers yet. Plox was open, creating a colorful ground cover in places. The glacier lilies had already gone to seed. But overall, we should see the full color in the next week or two. Already, there is less snow on the trail than there was when I brought my parents up at the end of July last year. This holds good promise that the high country is now open for business.

The best part about today’s excursion was the wildlife sightings, nearly all of them from the car as we were headed down. The only wildlife I spotted from the trail was a fesh pile of bear scat. But on the way down, I came across a very colorful Western Tanager, an elk on the road, a family of skunks (mom and 3 juveniles, I believe), and what I believe to be a wolf. As I came to the bottom of the incine where the road meets the creek, I saw a large dog standing in the intersection. It looked like a husky, definitely bigger than a coyote, but I was also far away so it’s hard to tell. It ran off, and I kept driving, but then I saw it again in the road, running away. I tried to catch up to it to get a better look, but it darted off to the side and then I lost it. I’m not absolutely positive it was a wolf. Coyotes are much more common and more likely, but this was bigger than any coyote I’ve seen, though smaller than a wolf should be. It was more grey and white, rather than the brownish-grey that the coyotes are. It could be a feral dog. Either way, it surely wasn’t tame as it spooked at the first sight of the car. So, it could be a wolf, but I’m not positive, and I hesitate to call it as such. It’s exciting, nonetheless.

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Fireworks in the Mountains

Celebrating Independence

A garden update from the last post: I’m happy to announce that the lettuce that the chickens ate down to the soil is growing back quite nicely and will be ready for consumption within a few days.

And now on to the main post:

Elk River hosts an annual Independence Day celebration they call “Fireworks in the Mountains,” but they don’t necessarily hold it on the 4th of July, but on the weekend before or after if the 4th happens to be mid-week. The event attracts a lot of people and the general store stays open late to sell its famous huckleberry ice cream. Of course, the local bar wasn’t doing to bad on business either.

The actual fireworks show was small, but the allure is that the loud bang can be heard reverberating off of the mountains all the way down the upper basin and back. However, the hoards of people visiting and camping had brought their own fireworks, and many bought some pretty big and expensive pieces, the kind that are illegal in most states. These added supplemental entertainment while waiting for the real show to begin.

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Gardening

I can’t believe it’s July already. Time is flying by this summer. June has been a mixture of hot and dry with cold and rainy, and that has been good for my garden. Last year, I built two raised beds, each 8′ x 4′, but I only got one bed filled with dirt. It yielded some nice tomato plants that I had started from seed, until the goat got in and ate them down. This year, I got the second bed filled with dirt and built two more 8′ x 2′ beds which I filled with strawberry plants. The two larger boxes contain tomatoes, peppers, lettuce, cilantro, and basil and some marigolds to help keep bugs away. The photo above was from early last week, and everything is doing well. The lettuce had been looking good, so this weekend, we actually picked a few leaves and had a very delicious home-grown salad. And then, for some reason, that got the chickens interested as well. The next day, we found the chickens eating lettuce out of the long boxes also full of lettuce on the porch. That’s when I ran outside to discover they had gotten to the garden supply first. All that gorgeous lettuce was gone in an instant.

I’m not sure what set them off. They had been in and around the garden area the entire season and not touched a plant. I wonder if by picking off leaves, the lettuce plants emitted a chemical that the chickens picked up on and finally noticed that the lettuce was there. I’ve since taken precautions to exclude the chickens from the fenced-in garden. We got some chicken wire and attached it to the gate, but had discovered that the chickens were still getting in. It turns out that the one side of the fence didn’t actually reach the ground, and the birds were able to walk right under it. So, I blocked that off and so far the chickens haven’t been back to bother the crops. I’m hoping that enough plant material is left for new leaves to start growing, but just in case, I planted some more seeds, though they won’t be ready for consumption for another two months. But by that time, the tomatoes and peppers should be ready and we can have a fully home-grown salad.

On the flower front, one of my natives that I bought and planted last summer had survived, and so the blanketflower is now in bloom. I also noticed a couple of sunflower plants growing. I hadn’t planted any this year, so they must have come from the bird feeder. One was starting to get pretty big when Mower (the goat) decided it was a lovely snack. Mow also loves to eat roses, and I noticed a few blooms on our rose bush had gone missing, so the goat is now grounded from the free snack buffet until the flower season comes to an end. She’s already eaten most of the flower buds from the day lilies, but a few remain in the back of the house.

Now that we had the mud/horse manure compost scraped into a big pile, it’s much easier to load into the cart. I’ll work on adding more raised beds to the vegetable garden, but we can also add some nice compost to the flower gardens this fall to help control weeds and feed the plants. We’re also going to rip out the creeping cedar bush that seems to be taking over and plant the area with flowers to attract hummingbirds and butterflies. I’d like to do mostly native wildflowers, but I’ll settle for a few cultivated varieties.

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Elk Butte

Elk Butte

Ever since I first visited Elk River during my interview trip in February 2010, I had a desire to get to the top of Elk Butte. After all, who could resist a lookout tower boasting 3000 foot views? The only problem was finding a suitable way to get up there. While the maps show a road to the summit, descriptions also warn that the summit is not accessible by car. Most people reach the summit by four-wheelers in the summer and snowmobiles in the winter. I had read that it was a 7-mile one-way trip, which ruled out a day trip for my hiking abilities.

Two weekends ago, during a scouting mission to the Morris Creek Cedar Grove, I decided to drive the roads on the mountain to see just how far I could get. It turns out, you can drive to within 3 miles of the summit. Running low on time, I decided to come back to explore this hike and bring some friends along. That’s what I did this past weekend.

Many of my friends have been out to the falls, but have never gone into the town of Elk River, let alone ventured back to the grove of big trees. So I took them back to see the Giant Cedar where they were amazed at the size of the tree. We also had some fun identifying wildflowers in bloom. Since we got a late start, we skipped the Morris Cedar Grove and headed straight to the mountain.

Elk Butte, the summit

The hike is 2.8 miles one-way on a gated road, thus the terrain is open on a well-defined path. The first half of the hike is completely open though a clear-cut. This patch is recovering with a nice cover of bushes and small trees creating a great habitat for birds. It also opens up the slopes to views of surrounding mountains. About a mile in, we reach a spot where we can see the summit. It’s tempting to hike stright up, but it’s certainly easier to walk the extra distance around to the other side. After this point, we re-enter the national forest and into a nice forested patch of hemlock and spruce with a dense understory of huckleberry. Based on the number of flowers on the huckleberry bushes, I think we may have a good year this year. During the last mile, the incline steepens as you gain about 500 feet to reach the tower.

An 80-foot fire tower stands on the summit of Elk Butte, however the cabin at the top is not accessible to the general public. A lower cabin at 30 feet is accessible by a stairway. Though the interior is locked, visitors can stand on the deck and look down at the town of Elk River 3000 feet below. There are theoretically veiws in all directions, but this requires you to lean around the cabin to see what is toward the north.

Elk River

Elk Butte sits in an ideal location, central to viewing some prominent landmarks around north-central Idaho. To the north, you’ll view the meadow-covered slopes of Freezeout Saddle. To the east, you’ll notice some high peaks beyond Dworshak Reservoir. These belong to the Mallard-Larkins area. Some of the other high landmarks require a clear day. To the southeast, you might see some snow-covered peaks on the horizon belonging to the Bitterroot mountains. To the south, behind the camas prairie is the snow-capped Gospel Hump. A little bit further west, the Seven Devils rise above the horizon, and beyond that, the Wallowas may be visible on a really clear day. To the West, you’ll gaze over the Palouse with Moscow Mountain as the first major feature on the north end.

View to the West: Mallard-Larkins

Elk Butte sits among active logging territory, so the scenery is dotted with patches of mature and cut forest. This can detract from the overall beauty, but remember, the logging operations sustain the economy of the region and also help in the conservation of some other special places. If you can look past the massive deforestation, you can get lost in the sheer number and size of the mountains. You’re truely at the edge of civilization.

View North, Freezeout Saddle

If hiking to the summit, the trail is accessible by car on well-maintained logging roads. If four-wheeling to the summit, there are trails that take off from the base of the mountain. This can easily be combined with a trip to the cedar groves and the falls for a full-day or weekend visit at Elk River. Be sure to stop at the general store for some huckleberry ice cream. We unfortunately got there too late on this trip. For a map and directions to the trailhead, view my trip report here.

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Perkins (Morris) Cedar Grove

Perkins Cedar Grove

 

I think I’ve mentioned before that there are a number of cedar groves, stands of old-growth Western Red Cedar, nearby. I’ve already posted about the Hobo Cedar Grove out near Clarkia and Grandfather Mountains. Several times I’ve been to the Giant Cedar out near Elk River. On our way into Idaho when I moved out here, Erin and I stopped at the DeVoto Cedar Grove along Rt. 12. There is a cedar grove on Moscow Mountain, but I haven’t been up there to explore it yet. The last one that I know of in the immediate area is also near Elk River on the way to the Giant Tree. Its the Morris Creek Cedar Grove, recently renamed the Perkins Cedar Grove.

To get there, follow the North Basin road out of Elk River as if you were going to the Giant Tree. There will be a left turn with a sign for the Perkins Cedar Grove a few miles up. Turn here and follow this road, keeping right at all intersections. You will rise above 4000 feet to a parking area along Morris Creek. The trail through the cedar grove is short, only a half mile, but it looks as though it sees far fewer people than either the Giant Tree or the Hobo Cedar Grove.

My first impression was that this is a nice patch of forest, but the trees aren’t nearly as large as the Hobo Grove, but as I got further into the loop, I rescinded my thoughts. There are a number of impressive trees up here along with an understory of ferns, trillium, and calypso orchid. It’s a very nice stroll through the woods, but nothing challenging. I would pair this with the Giant Tree and the falls for a complete day in Elk River.

Old growth forests are rare to come by these days. If they haven’t been logged by the lumber companies, many stands have burned due to years of fire suppression causing massive wildfires to erupt. It’s really nice to walk through stands of trees so old, they were standing long before Europeans came to America. There are four such stands that I know of within two hours of Moscow. There are a few more farther afield. I had been meaning to check out this grove since we arrived in Idaho almost two years ago. We’d always time our trips to the big tree such that we’d be hungry right after, so we had always passed up the extra trip to the Morris grove. Last year, the road was closed for construction, so we were unable to get to the grove. Finally, I made it a point to go up there and check it out. I’m glad I did.

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Adventures in fast, reliable ineternet

For the past seven years, I have been living with slow, unreliable internet. In 2004-2005, the Weis Ecology Center was on dial-up service. Camp McDowell in Alabama was also on dial-up service, shared on a wireless network. If you can remember far enough back when dial-up was the forefront of home internet technology, you might also remember how long it took for webpages to load and how it would randomly lose connection, and then the busy signals trying to reconnect. In 2006, those problems had not improved. Ferry Beach had a more reliable connection, though it was still slow. I’m not sure if, at the time, they were on cable, DSL, or satellite. But when I settled at the Sheridan School Mountain Campus in Virginia, the facility’s only option was dial-up or satellite, and satellite is just a little bit faster and more reliable than a dial-up connection. In my last year at the Mountain Campus, DSL became available, and we finally had a decent connection to the outside world.

Meanwhile, Erin was living in Hagerstown with cable. My parents had cable internet at home, too, so in between my working stints away from civilization, I had my technology fix. The funny thing about cable is that you rarely get the speeds you’re paying for. Today, this is probably not a problem. The lowest priced plans are probably around 3 Mbps which is more than plenty fast for just about anything you’d want to do online. But when Erin moved to the farm, we took a bandidth cut for a satellite connection that was very cranky and often unreliable.

Then we moved out here. The town of Deary actually has cable and DSL capabilities, but we live just 2 miles out of town, and that’s far enough that we can’t have either. Our only option at the time was satellite. I suppose I was just grateful I could have internet at the house, but it became increasingly frustrating. We paid for 512 kbps service, but saw actual speeds around 300 kbps or slower. Periodically, the service would just lose connection, sometimes for hours at a time. The other downside of satellite is the bandwidth usage caps. I could probably live with the slow speed, but we can’t even do things like stream movies because we’d use our monthly alloted download usage pretty quickly.

There was another potential option that we looked into, and that was wireless. First Step has wireless antennas throughout the palouse and surrounding region providing high speed internet to very rural places. There was a tower in Deary. The caveat is that you must have a direct line-of-sight to a tower to recieve a signal, and at the time of moving in, we did not. In the past year, First Step put a new tower in Deary on top of Spud hill, and we do have sight of the summit. So I requested a site survey, we recieved approval, and I signed us up for service. It was installed yesterday.

Suddenly, its like we’ve caught up with the present. Sort of.

The good news, we’re paying less for 1.5 mbps service than we did for our crappy satellite signal. We’re also seeing realized speeds in the vicinity of tthat which we are paying for, something that doesn’t always happen with cable or DSL, and certainly not with the satellite. Oh, and there are no usage caps. We can now stream movies, use skype, download large programs and OS updates. So, I may sign up for Hulu Plus and Netflix Streaming, since we don’t have TV service, and keep up with the shows I’ve been missing.

The novelty will wear off soon, but its nice to know we can have fast, reliable internet out here in what seems like the middle of nowhere.

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Oregon Butte: The Successful Failure


View Oregon Butte – 5/26-27/2012 in a larger map

Things don’t always go according to plan. Along the journey, you discover new interests or find obstacles that end up providing you with a totally different experience than originally expected. This lesson was hard hit this weekend as we attempted a backpacking trip in the Blue Mountains of southeastern Washington. The trip was a success, but certainly not what I had expected.

It’s really a lesson in not getting enough information ahead of time. On paper, it looked like the perfect trip. It’s a 16-mile loop up Panjab Creek to the Mt. Misery Trail on top of the  canyon ridge. The campsite is a place called Table Camp, located on maps with a spring just a mile before Oregon Butte. The return is via Turkey Creek which merges with Panjab Creek to complete the loop. Seems simple.

View on Oregon Butte

The weather was already looking sketchy. The forecast called for cloudy skies and 40% chance of snow on Saturday and 30% chance of snow and rain on Sunday. But the highs were in the 50’s and lows right around, but still above freezing. But that had been the weather for the past week, and that generally meant an hour or two of precipitation followed by sunshine. We decided to go for it.

On Saturday morning, 7 of us left Moscow and headed toward the Blue Mountains. Two more would come later and meet us at the campsite. The drive in was relatively straightforward. The campgrounds along the Tucannon River were packed, but there was plenty of parking at the trailhead. The Panjab Creek trail follows the creek for about 3.5 mile through some beautiful forest. Highlights include a stand of Pacific Yew, tons of wildflowers, and the sound of the rushing creek. The next two miles become a little steeper as the trail switchbacks up the side of the canyon, topping out in a large meadow full of Grass Widow. At this point, we have risen about 2000 feet with only a couple hundred more to go. The last three miles are fairly gentle along the ridge, with fallen trees as the only major obstacle. There is some snow up there, but not so much to make the trip miserable.

Eight miles and 5 hours later, we reached table camp only to find that there was considerably more snow on the mountain slopes than I had anticipated. The spring that was supoosed to be near the camp was nowhere to be found, either no longer active, or burried deep beneath 3+ feet of snow. We made camp anyway because we were all too tired to move on. There was another spring on the map a half-mile ahead attached to a creek. I had hopes that maybe this one would be more reliable. So I set out with a small search party, but after a painful expedition, we came back without water. We hadn’t planned on dry camping. Luckily there was an abundance of snow surrounding us, and the firewood supply was neverending, so we were able to melt snow without using up our stove fuel.  Melting snow for 9 people is a slow process, but its better than going without water.

It didn’t rain on us at all on Saturday, though the sky remained overcast. That was alright. We could still see out to the Wallowas and it wasn’t too hot or too cold. In fact, it never really got too cold at night. I suspect there had been an inversion where we had the warmer air on the ridge while all the people car camping along the river had the chill. The wind wasn’t even blowing, so in all, it was a very pleasant evening.

I’m not sure what time I actually awoke, but I’m told it was before 6:00 am. There was actually blue sky and it looked like the sun might peak through the clouds. Tyler and Genevieve were up shortly after and we started a fire and made ourselves breakfast. There was no sign of movement from any of the other tents. So after waiting, Tyler and I decided we’d make a go for the summit without packs. The worst of the climb was at the beginning. The snow was slick and a few of the slopes were steep. But when we reached the top of the ridge, there was actually a strip of bare rock. From there, we could see up the last ridge to the summit of Oregon Butte where the lookout cabin stood. There was a cornice at least 10 feet high, but again, the ridge back was baren of snow.

At almost 6400 feet, the view on Oregon Butte is amazing, and the photographs provided don’t even do it justice. The drop down to the rivers below is about 3000 feet. The landscape is bigger and more rugged than it looks on the map (or Google Earth). It’s probably even more impressive on a clear day, though even with the clouds and the haze, we could still make out the high peaks of the Wallowas and the Seven Devils. I imagine that the snow will melt in the next few weeks and the butte will be available as a dayhike from Teepee. I should like to return.

When we returned to camp, everyone else was up and finishing breakfast. After discussing the prospects of finishing the loop though the high elevation snows, we concluded that it would be best to just turn around and hike back the way we came. As we left camp, the sun came out and remained with us for the rest of the day. When we reached the trailhead, the temperatures had risen to a balmy 65 degrees. I was bushed by the end of the hike. I’ve never come out of a trip that sore before, and I’ve hiked longer trips with longer days. I attribute it to being out of shape from the winter. Nevertheless, I feel that the first backpacking trip of the 2012 season was a success, and I’m already looking forward to the next one.

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A Tale of Two Hikes

Feather Creek Trailhead

I was left home alone this weekend. Erin had gone down to Boise and Ontario, OR for a regional meeting of one of the support groups she attends. She was also taking Lana down to Boise to be transported to her new home with a trainer in Wyoming. So while she was gone for three days, I was in charge of watching the animals. This unfortunately meant I couldn’t go out for any extended trips. No backpacking. No camping.

So I did what any responsible adult would do when he’s got the house to himself: I threw a party. Well, not a kegger or anything huge. I invited the remaining Biology graduate students out for a cook-out and fire. It was a blast. I’ve got to do this more often. I think everyone enjoyed getting out of Moscow for the evening, too.

But back to the hikes. Saturday turned into a hike followed by a cook-out and fire. A few people came out early and we headed to Elk Creek Falls. One of the new post-docs and her husband had just arrived and this was their first excursion out of town. It was a nice day to go to the falls. The hill sides were still green and the water was raging. The vegetation in front of the lower falls overlook had been chopped back so there was a clear view. I’ve been to Elk Creek Falls many times now, and yet I don’t have any photos posted online. How can that be?

Today, I took the dogs on a longer hike. Tyler, Gen, and Matthieu went for a hike on the Feather Creek loop last weekend, and I wanted to check it out for myself. This trail isn’t very well publicized, which might be why I had a hard time figuring out where it was on my own. I heard about it from Mattheiu, who in turn found out about it from the guys at Hyperspud Sports in town. The five-mile loop isn’t very scenic. There are no views and no landmark points of interest. It’s just a trail that follows a creek for two miles, and then returns through the woods.

What it lacks in major attractions, it makes up for in the little things. At first, it seemed like this was going to be a hike through recently logged / newly regenerating forest. While it’s certainly not old growth or as mature as the forsest surrounding Elk Creek Falls, but it becomes a nice woodland hike. The first thing I noticed were the flowers. Along the creek, there were tons of Western Trillium and Anemones in bloom. As the trail left the creek and ascended the hillside into the woods, the Calypso Orchids became more abundant.

 Bee and Western Trillium Calypso Orchid

The trail meandered back into a hollow where it crosses a few streams. Here the forest is full of larger trees, mostly cedar with some pines and firs. And then I stumbled upon a strange mushroom that looked like coral. Suddenly, I began to see it growing everywhere. A few steps farther down the trail, I noticed another mushroom, this one bright orange and shaped like a bowl. The final fungal find of the day were morrells, five in total. This was my first ever sighting of morrells in the wild. I’ve marked the spot on the GPS in hopes that I can return and collect some for cooking with.

Fungus Orange Fungus Morrells

Feather Creek is a five-mile loop through a nice mix of riparian and forest habitats. Though there are no major destinations along the trail, it provides a nice escape from the developed world and provides a couple hours of relaxation and feeling of solitude. Because its not well publicized, you’re likely to have this trail to yourself. This appears to be a promising wildflower and flora hike, but also seems like a promising place for wildlife sightings. There was plenty of bird activity, though I admit to not taking the time to try and identify everything I heard and saw. The trail is fairly new and appears to be well maintained. It’s not very steep and there’s not much elevation change, making it an easy hike for a family. There is a longer loop that takes off up the ridge, though the sign at the beginning claims this trail hasn’t been completed yet.

Feather Creek is located a few miles north of Bovill. To get there, travel north on Rt. 3 about 4 miles from Bovill. Turn left onto Talapus Creek Road. There will be a sign for the Feather Creek trail. Continue for a mile and turn right onto Feather Creek Road. The trailhead has a sign about 1.7 miles up.

Map and Elevation Information

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Asotin Creek… sort of.

Asotin Creek Canyon

The photo above was taken in February of 2010, my first visit to Asotin Creek. I’ve been back a couple of times as it is usually a reliable winter hike that is free of snow. I had never gone down in the spring when everything is green, and certainly not in the summer when temperatures can reach the 100 degree mark. So it was that Erin and I decided to spend a day down at Asotin Creek. The local wildflowers should be in bloom, and the hills might show hints of colors other than the drab brown of dried grass. We would also take the GPS and search for geocaches hidden along the trail. There are many.

So, we set out for the canyon, stopping in Clarkston to grab some food for Erin. We pulled off at the Headgate County Park to grab a few caches and let the dogs out to stretch their legs. As we approached the wildlife management area, I saw signs that a Discovery Pass was required in order to park. Washington has recently begun charging for vehicle access to its state recreation lands, and the Asotin Creek trailhead falls under this juisdiction. A day pass is $10, and an annual pass is $30. I certainly wasn’t going to pay that much for a day trip, and I don’t visit the state lands enough to justify a $30 pass.

During the winter, there is a gate across the road just before the trailhead, kept closed to keep cars out during the mating season. The gate is opened in the spring and summer, which allowed us to drive past the trailhead, through the state land, and into the national forest. Here the road climbs out of the canyons and into the high country (5000 ft.) where there are more trees and more green grass, and subsequently more wildflowers. The meadows were full of Grass Widow, Yellow Bells, Mountain Bluebell, and even the occasional paintbrush had started to bloom. As much as I like the desert-like habitat down in the canyons, the upper elevations are really my favorite place to be. Of course, the the best part of being up top is the view.

Views from Pinkham Ridge

When we reached the top, I pulled off the road onto a flat clearing with a view over the Asotin Creek canyon. Nearby, someone was burning and that had produced a thick haze over the mountains, but the view was still magnificent. I thought that this would make for a great campsite, and then I found a fire ring from someone else’s previous visit. We explored the meadow, looking at the wildflowers and then ate lunch.

We were really after a trail that traversed Pinkham Ridge. If we weren’t going to hike in Asotin Creek, we might as well hike above it. The Pinkham Ridge trail is really the top of the Asotin Creek trail, for after the trail heads upstream about 10 miles, it turns and heads up the steep canyon walls to Pinkham Ridge where it ends at a Forest Service road where we had parked. This last portion of the trail hasn’t been hiked very much and it certainly hasn’t been maintained. There’s no signs at the trailhead, and the trail itself seemed to have blended back in with the scenery. However, the brush and forest isn’t very thick and the grasses are short, so walking in this area isn’t too difficult, especially since the trail follows a narrow ridge. However if you were to come up this way, be sure to at least carry a map, but a GPS might be useful too.

We hiked just under 2 miles down the ridge to a little shelf and clearing, and there we laid out a blanket and napped in the tranquility above the canyon. We saw Mountain Bluebird and Stellar’s Jays and listened to the songs of the Chipping Sparrow, Chickadees, and nuthatches. So, what began as a disappointment turned out to be an awesome adventure. Next time, we can prepare for a full day in the Blue Mountains and just skip Asotin Creek altogether.

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The Last One

Pink Girl

Since last week, we had been down to three puppies. Three is much more manageable than seven, but still a crowd. In fact, having two out at a time was still a handful. Tuesday, I made up posters advertising the rest of the pups, and in less than 24 hours, we had two more sold. This left us with one Pink Girl to care for.

Having one puppy isn’t so bad. They’re a lot more mellow by themselves, they don’t eat as much, and most importantly, there’s not as much pee and poop to clean up. Of the three that were left were all the lighter dogs. It seems that the darker color is more popular. But the lighter dogs had the better personalities. Green Girl and Brown Boy were so mellow and laid back. And Pink Girl just wanted love and snuggles. If we were to have kept one, Erin would have kept Brown Boy. I think I would have chosen Pink Girl.

Pink Girl was very much like Greta in some ways. Her number one goal was to snuggle up to you an give and get love.  It turns out, she really likes to nap in someone’s arms. She really liked Greta and looked up to her so much, but Greta would grumble and put up with it. I think she was just jealous that the puppy was getting attention instead of her.

A day went by and there were no more calls. I thought that maybe we would actually keep Pink Girl because nobody seemed to want her. Then we got three inquiries on Friday. Erin really wanted to keep a puppy, and I’ll admit that I was attached to the idea myself, but the reality is that we can barely afford the animals we have, and until our financial situation improves, we really should not be adding to our collection. So, we loaded the puppy into the car and brought her into Moscow with us where she met her new family. And with that, we are now puppyless.

We still have Lana, the mother. While she’s calmed down a little, she can’t stay with us forever, and she’s going to have to go sooner than later. Erin has been looking into rescue centers because she’s not likely to find a home going to one of the humane society shelters, even though the local shelters are no-kill.

So in a few days, we should hopefuly be back to our normal life with only two dogs…

… and four cats, four horses, three birds, a goat, a hedgehog, a fock of chickens, and a tank full of fish. Did I miss any?

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Evo-WIBO weekend recap

Seattle Skyline

This past weekend, I was in Port Townsend, WA for the bi-annual Evo-WIBO meeting. Evo-WIBO is a small, regional gathering of someo of the biggest names in evolutionary biology in the Pacific northwest. Its only a day and a half long and very informal. Yet, because of its size and intimacy, I got more out of this meeting than I did when I presented at the much larger SICB meeting in January. I met and hung out with more people than I would have, which made it a lot of fun. The only downside is that it was so nice out that I felt bad spending the day inside instead of being out exploring a new place.

My talk went well. I presented the results from our selection experiments, but dropped the open field data due to time constraints. Instead, I added the little bit about the dimensionality of the G-matrix that we estimated. My talk was near the end of the day, and I was the first person to mention the G-matrix all day, which I heard got a nod from Steve Arnold.

Fort Worden is a decomissioned WWII fort on the corner of the Olympic Peninsula. There are gun batteries positioned throughout the grounds, but much of the land is forest or beach. The barracks have been converted into a convention center, which is how we got to have our conference at the park. This is great birding habitat, and wouldn’t you know it? I left my binoculars at home. On a clear day, there are spectacular views of the Mt. Baker and the northern Cascades across the water, and from the right vantage point, you can even see Mt. Rainier to the south.

Port Townsend is a nice little town. It’s definitely built for the summer tourist season, but it seems like a place worth coming back to explore. The little downtown area is packed with shops and restaurants. I figured that since I was on the coast, I’d get seafood for dinner, and I had the best crab riggatoni ever. Unfortunately, I didn’t get to spend much time in town beyond dinner, so perhaps I’ll return when I get a chance to explore the Olympic Peninsula. The next meeting will be in two years, so I’m hoping I’ll be in a position to take some time off while I’m out there. It’s such a long trip for only a day and a half. From Moscow, the trip can be made in 6.5 hours, but it generally takes longer with meal and bathroom breaks. The bulk of the drive isn’t very scenic either. There’s a good two-hour stretch on open, flat land through central Washington that just seems to go on forever. It’s apparently faster to drive down to Tacoma and around the Puget Sound, but the ferry ride from Seattle to Bainbridge Island gives a much needed break from driving and a chance to enjoy the Seattle skyline and the mountains. Despite the clear blue skies, it was too cloudy to see the mountains on the way out, but on the way back, Mt. Rainier stood majestically above the landscape. It was an awesome sight.

So to recap, Evo-WIBO is awesome, fun, and a great place to network and meet other people nearby in evolutionary biology.

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Another conference, how about that?

Somehow, I managed to go to two conferences in one semester. Tomorrow, I’ll be heading to Port Townsend, WA along with several other members of the department for the bi-annual Evo-WIBO conference. This is a small, regional conference for evolutionary biologists in the Pacific Northwest. There are only going to be around 200 or so people attending (compared to the 2-3000 at SICB), and there is only one talk session at a time. So lucky me, I got chosen to give an oral presentation.

Did I mention it’s a small conference? It begins Saturday morning and ends Sunday at noon. All that for a 7-8 hour one-way drive. It’s too bad that I have to be back in Moscow on Monday because I’d love to stick around and explore the Olympic Penninsula a bit.

Such is life, I guess.

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Puppies for Sale

Puppies at 8 weeks

The puppies are now over 8 weeks old and oh so cute. As you can imagine, seven growing pups indoors can create quite a mess that is hard to keep on top of. On top of that, any time you step into their room, they all mob you for attention. So, as spring weather has descended upon the Palouse, we found scrap lumber and fencing and built an outdoor playpen for the dogs. So far it is doing the job. It’s also giving the pups some much needed fresh air and sunshine, which in turn tires them out so all they want to do is sleep when they come in at night.

The dogs have quite a range of personalities. Some of them are going to be very active, great for life on a farm or as an outdoor companion. Two of them are quite mellow and would rather cuddle up with you. They’re all very friendly and very loving.

So, the puppies are now ready for their own families. Did I mention that they are pure-bred German shepherds? If you’re in the Northwest area and would like a dog, or know someone who would like a dog, please contact me. I’d like to find them homes sooner than later.

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LaTeX

 

p' = \frac{w_{AA}p^2 + w_{Aa}pq}{w_{AA}p^2 + w_{Aa}pq + w_{aa}q^2}
 

This semester, one of my classes has required me to turn in all of my assignments in LaTeX. LaTeX (la-tek) is built on TeX, a typesetting language meant to produce beautiful documents reminiscent of the days when papers were printed from engraved plates. Typesetting was an art that got lost in the digital age.

When I first got the news that assignments were to be handed in using LaTeX, I admit I was a bit worried. The assignments were already going to be difficult enough since it is a bioinformatics class working with data types I have not been used to dealing with. On top of that, I’d have to learn a new system for typing up my homework. It has been a pain in the butt, but it has also been fun and pretty useful. One of the big advantages of LaTeX is its typesetting of mathematical formulas. It is easy and elegant, once you get used to the syntax. Anyone who has used the Microsoft equation editor that comes with Office knows it is a pain to work with. The point and click interface is slow and clumbsy. The LaTex looks ugly, but it also makes sense. The formula above reads as follows in LaTex:

p’ = \frac{w_{AA}p^2 + w_{Aa}pq}{w_{AA}p^2 + w_{Aa}pq + w_{aa}q^2}

The second advantage of LaTeX is that it can be completely integrated with R, the programming language that I use to analyze data. Natively, R outputs to plain text. But LaTeX integration with Sweave lets me run R code along with the TeX document and output data tables and graphics in a printable format, integrated with text. Plus, if I need to alter the R code, I can do so right in the Sweave document.

Lately, I discovered a LaTeX plugin for wordpress that allows me to make mathematical formulas in LaTeX’s math mode. There’s currently no math typesetting for html, yet the internet is a great resource for learning about math topics. Unfortunately, the LaTex doesn’t integrate as selectable text, but instead is output as an image, but it’s a good start for now. Perhaps I can make some future posts that involve some mathematical modeling of biological topics.

Since I have been using LaTeX for bioinformatics class, I have been using it to turn in assignments for other classes. It has been a useful medium for typing up Quantitative Genetics problem sets, and the presentation that I’ll be giving at Evo-Wibo in two weeks will be made using LaTeX. At some point, I’ll have to install Lilypond, a typesetting language for producing music notation.

I’m a nerd, and proud of it.

By the way, extra props if you understand the equation at the top of the page.

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Attempting to Snowshoe

Gold Center Trail

This past weekend, we had a nice day on my day off for once. So I took advantage of the sunshine and warm weather to get out and hike. Or so I thought.

I’ve been waiting to take my snowshoes out for a real winter trek, and the timing has been bad. I set my sights on the Gold Center trail, which leaves at the base of the mountains behind Clarkia and climbs its way up to the ridge just below Grandmother Mountain. I’ve always wanted to hike this trail, and winter seems like the best time to do this since the trailhead at Freezout Saddle is inaccessible.

The road out was rough as the snow was wet and almost slushy, but my Subaru made it with no trouble. Due to the past few days being so warm, I was expecting some dense, heavy snow that is fairly easy to walk on. But I found that while the snow was heavy, it was still very much unpacked, and even in snow shoes, I was having a tough time walking. Perhaps I should have brought the extra flotation tails with me after all, or perhaps I’m just woefully out of shape.

Deary has almost no snow left. Moscow and Pullman are dry. But Clarkia still has 2-3 feet, and the mountain elevations were getting fresh snow when we had rain at the bottom. That seemed promising. But I didn’t get out until after 1:00, so I had given up on making it to the ridge on this trip. I hadn’t expected the walk to be so difficult that it took me an our to go one mile on flat terrain.

Nevertheless, the snowy forest was beautiful, and my tracks were the first on this trail. Even the snowmobiles hadn’t gone this far in. The idea of getting to the summit of Grandmother Mountain in winter is somehow in reach, aided by the longer days. Still, it’s a 5+ mile, 3000 ft. ascent, so we’ll see. If I can float better on the snow, I may be able to endure the full 10 miles in one day. Otherwise, it may be summer challenge.

Gold Center Creek Grandmother Mountain

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Small World



Harvest Moon, originally uploaded by Matthew Singer.

Beth, one of the photo club members and employee at the Prichard Art Gallery downtown, mentioned at our last meeting that a student was in town with the current exhibit at the gallery. He didn’t know anyone and was desperate to hang out with people his own age. So we got a group together last night and hung out around the town.

I thought the visiting student was an art student, but it turns out he’s actually studying conservation biology and had spent some time working environmental education. And, he’s from Maine. Well wouldn’t you know it? He spent some time at the Ferry Beach Ecology School. He knows a lot of the people I worked with, either by working with them himself, or interacting with them during one of the FBES alumni reunions that I have been unable to attend. He’s also in grad school with another Ferry Beach alum that I worked with.

In addition to teaching environmental ed, Will is also an avid birder and hiker. He’s an awesome guy and I now wish I had the opportunity to work with him in Maine. So far, he seems to be enjoying his time in Moscow, so maybe we’ll get him to return for a more recreational visit.

It’s a small world.

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Babies

 

Puppies

Out of nowhere, our dog population has increased four fold. Here’s the back story.

Several weeks ago, I came home to find two extra dogs at the house. They were two German Shepherds, a male and a female, that Erin had decided to watch for a friend while she got on her feet and found a place to live with her dogs. Four big dogs in our tiny house is a bit much, and it didn’t help that the two we were watching were very active. Lana, the female, is a very nervous dog, especially around men, and she would just pace around. Ace, the male, was a one-year old and in tact, so his energy was more youthful, but nonetheless, he also began to pick on our other animals. The two would routinely stalk the cats. But the last straw was when they, along with Greta, attacked and killed one of our chickens. We had to return the dogs for fear that one of the cats would be the next victim.

Lana was also pregnant before we got the dogs. The original owner was unable to keep both dogs and Ace was her baby. She had acquired Lana from someone else. She was going to breed the dogs and sell the puppies, and as it turned out, Lana was pregnant. So when we went to return the dogs, we made the deal to keep Lana indefinitely and deal with the puppies. So, Lana is now our dog for the moment.

The puppies came yesterday, starting around 7 pm. When I got home an hour and a half later, the fifth puppy had popped out. When it seemed like she was done, three more came out. We have eight puppies in total, all purebred German shepherds. The goal is to sell them all in 8-10 weeks, and once they are gone, we will find Lana a new home.

Puppies Puppies

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It’s going to be a busy semester

Somehow,  I had arranged the semester to be fairly light allowing me to work on my research. I was only signed up for one class, the work of which parallelled the work I have to do for my degree, namely write up a dissertation project proposal. On top of that, I was slated to teach one lab section, so overall my class and teaching load would be light. Funny how things actually work out. I am taking 3 classes, though one not for credit, and teaching two sections of lab. 314 lab isn’t really that bad, it’s all computer-based, but the extra time committment and grading will be a minor annoyance. The bioinformatics class will be fast-paced and full of work, but I should come out of it with the basic tools to analyze  gene expression and sequencing data that will surely be a part of my dissertation. And Quantitative Genetics is just something that I need a firm background in since we are primarily a quantitative genetics lab. So all of that, topped with a research proposal and a manuscript of the selection data I presneted last week, and I’ve got a busy semester ahead of me.

So much for having a breather.

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Of data and formatting

I’ve been in graduate school now for a year and a half, and I have yet to reveal just what it is I’m working on. Almost immediately coming in, I took over a project originally designed and run by Mary Oswald, the previous doctoral student who had graduated over the summer and left the lab officially at the end of my first semester. The project, in essence, is a selection experiment to analyze the genetic component of boldness, a trait often associated with the evolutionary process of domestication. Our model organism is the Zebrafish, Danio rerio. The back story is that in the wild, Zebrafish, like most organisms, are are very shy to humans, yet their domesticated counterparts are indifferent, even showing preference toward associating with their human caretakers. Boldness, in many circumstances, can be a learned trait. Feral cats, for example, tend to cower and run from people despite coming from a lineage of centuries of domestication. Even individuals coming from a captive home may become fearful of humans when abused or neglected.

In this respect, behaviors can be thought of as a quantitative trait, part of which is controled by the effects of several loci in the genome, part of which is controlled by the evironment of the individual, and part of which may be contributed to the interaction between the genotype and environment. There is certainly a variation in environment between a wild and captive habitat, but within each habitat, selection favors different traits. In captivity, selection on a trait may be intentional such as growing larger salmon for food production, or it may be a by-product of selection on other traits or just simply a relaxation of selection that had been occuring in the wild. The current project I am working on is the start to help us understand the genetic component of boldness. But an understanding of the genetic components of behavioral adaptation to captivity can have some major implications toward the way we run endangered species conservation programs.

In 2007-2008, Mary began a slection experiment where she phenotyped a random population and bred the boldest and the shyest individuals to create two diverging selection lines. She actually attempted this in multiples strains, but didn’t have enough success with the wild strains to continue the trials. Thus our data is only for the commercially-bred Scientific Hatcheries line. After 3 generations past the initial, she had two siginificantly diverging lines, but in order to publish the results, we had to have an independent replicate to show that our results were not due to genetic drift. So that’s where I come in. In the summer of 2010, Mary began a second round of selection on a new population of SH fish, and since the end of 2010, I have been continuing that process.

I have just bred our second generation this semester with lots of 3rd generation individuals to work with, so I’m confident we can keep going longer than the first trial. But we have a complete replicated experiment to compare with Mary’s original data, and that’s what I plan to present to the Society for Integrative and Comparative Biology (SICB) conference in January.

The biggest hang-up so far has been combining Mary’s data with mine. In order to analyze the pedigree, each individual must have a unique ID number. But when Mary ran her selection, she started over each generation. Her data was also formatted slightly differently than mine, so I have spent the past few days tryign to interpret what she did and format her data to fit mine. After several days of hard work, I’m happy to say that I think I have a data set I can now throw into WOMBAT to analyze with a REML (that’s Restricted Maximum Likelihood for you non-stats people) analysis and get an estimation of heritability for boldness in zebrafish. Of course, now I actually have to figure out how to use WOMBAT.

Like I said before, this is only the beginning. We need to run a QTL analysis and we’re waiting on some SNP data to identify regions of the genome that are candidates for genotyping. We have fin clips for every individual in both trials, waitin and ready for DNA extraction for analysis. Once we get genotypes, we’ll have a better understanding of what’s going on evolutionarily and we can set our sights on some questions regarding the evolutionary processes that contribute to domestication.

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Happy Thanksgiving

Holy crap it’s Thanksgiving already!  Well I’ve been thinking about what to make this post about. There are several great options: The real story of thanksgiving and how it became what we perceive it to be today, the start of the commercial materialism season, the nature of human behavior, and so on. But I think rather than the normal cynical post about our need to celebrate lies and propaganda, I’ll just fill you in with a brief update of what I’ve been up to.

For starters, it’s been a busy semester. The past month, I’ve been breeding the 3rd generation of selection fish with mixed success. Several families have produced over 200 eggs repeatedly, and even with the high mortality rates, we’re getting a good number of survivors. Some of the families have more trouble breeding than others, but at this point, I think we’ll have enough adults to test four families from each line.

I’ve been sitting on my data from the second generation since the summer ended, busy with teaching and class work. I don’t really have any options to wait anymore. In January, I’ll be presenting the results at the Society for Integrative and Comparative Biology (or SICB) meeting in Charleston, SC.

Last week, I got to meet photographer and photojournalist Steve McCurry. His work for National Geographic is legendary and has been featured on the front covers for the past 30 years. It was neat to meet him in person, hear him speak, and see some of his work on display at WSU.

Erin and I had our second annual Thanksgiving dinner on Saturday. Last year we had a small affair with way too much food. This year, we invited many more people, mostly graduate students from the department, and ended up feeding 16. We had a good time and the food was great. The left-overs are dwindling down, but the turkey soup Erin made last night is to die for.

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